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Short Vita
01/2012- today Postdoc in the department of Genominformatics, University Duisburg-Essen, Essen, Germany
09/2008-12/2011 PhD student in the department of Bioinformatics, University of Würzburg, Germany
09/2006 - 08/2008 Master studies in Molecular Biology (Field: Bioinformatics) at the University of Applied Sciences Gelsenkirchen, Recklinghausen, Germany
09/2003-08/2006 Bachelor studies in Molecular Biology at the University of Applied Sciences Gelsenkirchen,
Recklinghausen,
Germany
Publications
Beisser, D., Brunkhorst, S., Klau, G. W., Dandekar, T., Dittrich M and Mueller T. (2012) Robustness and accuracy of functional modules in integrated network analysis. Bioinformatics, 28(14), 1887-94.
Beisser, D., Grohme, M. A., Kopka, J., Frohme, M., Schill, R. O., Hengherr, S., Dandekar, T., Klau, G. W., Dittrich, M., and Müller, T. (2012) Integrated pathway modules using time-course metabolic profiles and EST data from Milnesium tardigradum. BMC Systems Biology, 6(1), 72.
Förster, F.; Beisser, D.; Grohme, M. A.; Liang, C.; Mali, B.; Siegl, A. M.; Engelmann, J. C.; Shkumatov, A. V.; Schokraie, E.; Müller, T.; Schnolzer, M.; Schill, R. O.; Frohme, M. and Dandekar, T. (2012). Transcriptome analysis in tardigrade species reveals specific molecular pathways for stress adaptations. Bioinformatics and Biology Insights, 6, 69-96.
Förster F., Beisser D., Frohme M., Schill R.O. and Dandekar T. (2011). Bioinformatics identifies tardigrade molecular adaptations including the DNA-j family and first steps towards dynamical modelling. Journal of Zoological Systematics and Evolutionary Research, 49, 120-126.
Beisser, D., Klau, G. W., Dandekar, T., Mueller, T. and Dittrich, M. (2010). BioNet: an R-package for the functional analysis of biological networks. Bioinformatics, 26, 1129–1130.
Förster, F., Liang, C., Shkumatov, A., Beisser, D., Engelmann, J. C., Schnölzer, M., Frohme, M., Müller, T., Schill, R. O. and Dandekar, T. (2009) Tardigrade workbench: comparing stress-related proteins, sequence-similar and functional protein clusters as well as RNA elements in tardigrades. BMC Genomics, 10, 469.
Book chapters
Dittrich, M., Beisser, D., Klau, G. W. and Mueller, T. (2010). Functional Modules in Protein-Protein Interaction Networks. Systems Biology for Signalling Networks, Springer, 353-369.
Posters
Beisser, D., Dandekar, T., Klau, G., Dittrich, M. and Mueller, T. 2011. Consensus Modules - Confidence Values for Integrated Biologial Network Analysis. ISMB/ECCB. Vienna, Austria.
Beisser, D., Dandekar, T., Klau, G., Dittrich, M. and Mueller, T. 2010. Confidence Scores for Functional Modules - A Jackknifing Approach. Workshop: Statistical and Dynamical Models in Biology and Medicine. DKFZ, Heidelberg, Germany.
Beisser, D., Brunkhorst, S.,
Dandekar, T., Klau, G., Dittrich, M. and Mueller, T.
2009. A Validation Study: Finding
Modules in an Integrated H. sapiens
Network. EMBO
Practical Course: In silico systems biology: network reconstruction, analysis
and network based modelling. EBI,
Hinxton, England.
Förster, F., Liang, C., Beisser, D., Frohme, M., Schill, R.O. and Dandekar T. 2009. Functional protein clusters and regulatory motifs in Hypsibius dujardini and Milnesium tardigradum. The XI International Symposium on Tardigrada, Tübingen, Germany.
Beisser, D., Brunkhorst, S., Dandekar, T., Klau, G., Dittrich, M. and Mueller, T. 2009. A Validation Study: Finding Modules in an Integrated H. sapiens Network. International EMBL PhD Student Symposium, Heidelberg, Germany.
Beisser, D., Boyanova, D., Dandekar, T., Klau, G., Dittrich, M. and Mueller, T. 2009. Improving the Detection of Signal Modules – A Comprehensive Evaluation. German Symposium on Systems Biology, Heidelberg, Germany.
Beisser, D., Brinck, H. and Wiebringhaus, T. 2008. Identification of Rich-club Components in Eukaryotic Protein Interaction Networks. German Conference on Bioinformatics, Dresden, Germany.
Beisser, D., Schüler, A., Brinck, H. and Wiebringhaus, T. 2008. Degree Correlation of Eukaryotic Protein-Protein Interaction Networks and their Skeletons. International Symposium on Integrative Bioinformatics, Lutherstadt Wittenberg, Germany.
Beisser, D., Brinck, H. and Wiebringhaus, T. 2008. Comparative Analysis of Fractality in Eukaryotic Protein-Protein Interaction Networks. International Symposium on Integrative Bioinformatics, Lutherstadt Wittenberg, Germany.
Talks
Jun. 2011. Robust Subnetworks – Computing Confidence Values for Functional Modules. Ascona Workshop: Statistical Challenges and Biomedical Applications of Deep Sequencing Data. ETH Zürich, Acona, Switzerland.
Nov. 2010. BioNet - Routines for the functional analysis of biological networks. Bioconductor Developer Meeting Europe, EMBL, Heidelberg, Germany.